______________________________________________________________________Revista Cientifica, FCV-LUZ / Vol. XXXIV, rcfcv-e34307
3 of 11
Serotyping of isolated Escherichia coli
The strains were stored at -80
o
C with the appropriate code number.
Since the ETEC group expresses mbriae antigen, all isolated E. coli
were passaged on MINCA agar (potassium dihydrogen phosphate 1.36
g·L
-1
, disodium hydrogen phosphate 8.05 g·L
-1
, casamino acids 1.0 g·L
-1
,
glucose 1.0 g·L
-1
, agar 15.0 g·L
-1
trace salt solution 1 mL).
The latex test detected E. coli isolated on MINCA agar with F5 (K99)
antiserum (51173, SSI Diagnostica). For detecting somatic antigens, E.
coli to be passaged on MINCA Agar, antiserum Pool1 EPEC/VTEC/STEC
O26, O103, O111 EAEC, O145, O157 (44292, SSI Diagnostica København,
DK), antiserum Pool2 EPEC O55, O119, O125ac, O127, O128ab (44293,
SSI Diagnostica København, DK) were conrmed by latex testing
with antiserum Pool3 EPEC O86, O114, O121, O126, O142 (77713, SSI
Diagnostica København, DK).
Also, these pool antigens could detect EAEC serotypes such as
O127 in Pool2 and O86 in Pool3. In addition, the isolated strains were
heat inactivated in an autoclave (NC100, Nuve) at 121
o
C under 1 ATM
pressure for 75 min, SAT antigens (~108·mL
-1
) were prepared, and
serotyping was performed with E. coli O1 STEC, O2 STEC, O8 ETEC,
O9, 033, O38, O78 ETEC/EAEC and O101 ETEC monoclonal antisera
(SSI Diagnostica København, DK) according to lace formation by SAT
method in microplate [21]. The strains were serotyped with a total of
23 different somatic antigens. For selective isolation of VTEC, STEC,
EHEC Group, E. coli O157:H7 was identied by passaging on sorbitol
MacConkey agar E. coli O157:H7 MUG Agar (44782, Merck) and conrmed
by latex test with antiserum pool1 (44292, SSI Diagnostica). The strains
were also passaged on blood agar containing 5% sheep blood to detect
the presence of hemolysin enzymes. Nonmotile, lactose – negative
colonies grown on EMB and MC agar were typed as EIEC. They were
also molecularly conrmed by polymerase chain reaction (PCR). E. coli
that did not t the other typing classes were molecularly typed with
aggregative features and conrmed with Pool2 and Pool3 antisera and
named EAEC. E. coli O9 K99 ATCC 31616, E. coli O157 ATCC 43895, and
non – pathogenic E. coli ATCC 25922 were positive controls.
Determination of antibiotic susceptibility of isolates
The antibiotic resistance of the isolates was determined by the disk
diffusion method. E. coli isolates were incubated at 37°C on tryptic
soy broth (1054590500, Sigma Aldrich) for 12 h. After being adjusted to
McFarland (DEN, Biosan) 0.5 standard turbidity, they were passaged
onto 100 mL of Mueller Hinton agar (70191, Sigma Aldrich), spread with
a drigalski and incubated at 37°C for 12 h [22].
Zone diameters were recorded in mm. Antibiotic resistances were
determined according to Clinical and Laboratory Standards Institute
(CLSI) 2022 data. As a result of antimicrobial testing, it is dened
as resistant (R) if the zone cap is smaller than the CLSI breaking
point ranges, intermediate (I) if it is in the range, and sensitive (S)
if it is larger or equal. If the bacterial isolate was sensitive to 3 of
the antibiotic groups, it was categorized as multidrug – resistant
(MDR); if it was sensitive to two or only one antimicrobial group, it
was categorized as extensively drug – resistant (XDR); and if it was
resistant to all of them, it was categorized as pan drug (PDR) [23].
An analysis was made to determine the most preferred antimicrobial
agents in enteric therapy in calves and their resistance to imipenem,
which is preferred in human use. These antibiotics list: P: Penicillin,
AMC: Amoxacillin, CFP: Cefoperazone, CRO: Ceftriaxone, TE:
Tetracycline, IPM: Imipenem, SXT: Trimethoprim/sulfamethoxazole,
CN: Gentamicin, ENR: Enrooxacin, E: Erythromycin. The clinical
breakpoint was based on the resistance data of CLSI veterinary
isolates. For quality control strains, E. coli ATCC 25922 were tested
with the isolates.
DNA isolation from stool samples
According to the kit instructions, deoxyribonucleic acid (DNA) was
isolated from diarrhea stools using the QIAamp DNA Stool Mini Kit
(51604, Qiagen). The quality and quantity of DNA isolates were measured
with a spectrophotometer (Nanodrop 2000, Thermo Scientic).
Identication of bacteria with molecular methods
DNA was isolated from the pre – identied agents according to the
Wizard® Genomic DNA Purication Kit protocol. The concentrations of
the isolated DNA were determined by spectrophotometer (Nanodrop
2000, Thermo Scientic). Set 1, set 2, and set 3 multiplex primers were
designed according to the study of Lee [24], and set 4 multiplex primers
were designed according to the study of Oh [25] and Vandekerchove
[26]. The primer pairs specied in TABLE I in the project were used.
For the PCR mixture, ve μL Master mix (5x), 0.1 μL forward primer
(10 pmol/ μL, 0.1 μL reverse primer (10 pmol·μL
-1
), two μl DNA (100
ng·μL
-1
) 17.9 μL sterile nuclease – free water were added for a total
volume of 25 μL. The thermal cycle (T100, Bio – Rad) was repeated 34
times with a pre – denaturation step at 94°C for 10 min, followed by
94°C denaturation for 1 min, 60°C binding for 1 min, 72°C extension
for 1 min, and nal extension at 72°C for 10 min. A 1% agarose gel
was prepared for electrophoresis (maxicell – minicell, EC Apparatus
Corporation) of PCR products. Ethidium bromide was added to the
gel to a nal concentration of 0.5 μg·mL
-1
. Gel wells were loaded with
ve μL each of PCR products and 100 bp DNA ladder. The results were
visualized by a gel imaging device (212 Pro, Gel – Logic).
RESULTS AND DISCUSSION
In the herd from which samples were collected, rotavirus was
detected in 4/10 feces with diarrhea in newborn calves. In the other
4/10, rotavirus and Cryptosporidium spp. were detected as mixed. E.
coli K99 was detected in only 2/10 (TABLE II). In all animals, the fever
was around 40°C, the hair was uffy, and the mucous membranes
were dehydrated. Only animal number 4 with rotavirus diarrhea
had a fever of 41°C (FIG. 1). It was determined that the age range of
animals infected with rotavirus and Cryptosporidium spp. was between
10 – 15 d. Animals with E. coli K99 diarrhea were aged 3 – 4 d, and this
nding is compatible with other studies [27, 28]. Salmonella spp. and
Giardia spp. were not detected in fecal samples with diarrhea. A study
conducted with 300 calves with diarrhea in the region reported that
40% of calves in the 15 – 29 – day age group had rotavirus infection,
and 12.9% had rotavirus + Cryptosporidium spp. infection [29]. In the
prevalence studies of the agents causing diarrhea in calves in Türkiye,
E. coli was detected at a rate of 9.4% – 27.45% [30, 31, 32, 33, 34].
Since studies of calf diarrhea generally focus on diarrheal agents
(bacteria, virus, or protozoa), the bacteria causing septicemia are
overlooked. However, diarrhea and septicemia calves’ prevalence
are approximately 9.26% – 31% [5, 35, 36]. In this study, no pathogens
other than E. coli were isolated from blood cultures. All the isolated
strains were conrmed to be E. coli with differential media MC and
EMB media. In addition, the results were supported by the triple tube
method. All strains did not show hemolysis on blood agar, and E. coli