Molecular docking analysis / Yilmaz et al. ___________________________________________________________________________________________
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INTRODUCTION
Doxorubicin (DOX), also known as Adriamycin®, is an active
chemotherapy medication used to treat a variety of cancers, including
uterine, ovarian, lung, and breast cancers. However, its clinical
ecacy is constrained by signicant toxicities, such as cardiac,
hepatic, renal, pulmonary, hematological, and testicular harm [1].
The rate–limiting enzyme of glycolysis known as pyruvate kinase
(PK), is essential for the metabolism of cancer cells [2]. Most
cancers utilize glucose substantially more than normal tissue does.
Aerobic glycolysis, also known as increased glucose consumption
and elevated lactate generation in the presence of oxygen, is more
prevalent in cancer cells (the Warburg effect)
[3, 4]
, of which PK is
considered a key regulator. An enzyme called PK catalyzes the last
step of glycolysis by phosphorylating adenosine diphosphate (ADP) to
adenosine triphosphate (ATP) and converting phosphoenolpyruvate
to pyruvate. Previous research has shown that PK is essential for
cell cycle progression, tumor growth, maintenance of the malignant
phenotype, and cell migration. The major multi–ability enzyme PK still
has unidentied activities in malignancies [2, 5].
Some of the postulated causes of DOX toxicities include oxidative
stress, inammation, endoplasmic reticulum–mediated apoptosis,
and DNA / RNA damage. Superoxide (O
2
·
–
) and hydroxyl radicals
(OH·) are produced as a result of the cytochrome P–450 enzyme's
metabolism of the DOX, which damages cellular membranes [6].
After passing through the cell membrane and being reduced by
cellular flavoenzymes, the drug DOX causes an increase in the
production of intracellular free radicals [7]. Reactive oxygen species
(ROS) are produced by disrupting complex I of the mitochondrial
electron transport chain (ETC), which is DOX–mediated redox cycling,
according to a number of methods. When reactive species are
present, macromolecules (such as lipids, proteins, DNA, etc.) undergo
oxidative changes that have harmful effects
[8, 9]. The increase in ROS
generation, particularly O
2
·
–
and OH
.
, leads to tissue damage from DOX
as well as certain non–radical substances including singlet oxygen
(
1
O
2
), hydrogen peroxide (H
2
O
2
), and others [10, 11]. The myocardium
typically causes DOX poisoning, which eventually destroys other
organs [12]. The heart's work consumes a lot of ATP, which is produced
by a variety of metabolic processes using glucose, free fatty acids,
pyruvate, and ketone bodies. The heart may also adjust to variations in
the fuel supply. DOX slows lipogenesis, which then prevents lipolysis
[12, 13]. Overall, it is clear that the ATP produced by the metabolism
of fatty acids may have been altered, forcing the cardiomyocytes to
move to alternative substrates to produce ATP, such as glycolysis [14].
Normally, intracellular enzymes including glutathione reductase,
superoxide dismutase (SOD), and catalase detoxify ROS [15]. SOD
facilitates the dismutation of O
2
·–
into either H
2
O
2
or regular molecular
oxygen (O
2
). As a result, SOD provides excellent antioxidant protection
in almost all live cells exposed to oxygen [16].
By incorporating a protective agent into DOX treatment methods,
numerous strategies have been developed to reduce these
adverse effects. Based on these beliefs, numerous antioxidants,
anti–inflammatory, and anti–apoptotic medications have been
recommended to combat produced damage sales [17, 18].
Honeybees (Apis mellifera L.) gather propolis, often known as bee
glue, from the leaf buds and bark ssures of many different types of
trees [19]. The composition and effectiveness of propolis varies widely
depending on its source, location, environment, and age. It contains
more than 150 polyphenols, including their esters, and avonoids like
phenolic acid. The avonoids in propolis are abundant and exhibit
potent free radical scavenging properties. Additionally, it includes
several vital minerals, including Ca, Zn, Mg, Cu, Mn, Fe, and Ni, as well
as vitamins E and C, vitamin B complexes, certain elements, and other
vitamins. As a result, it demonstrates a variety of biological functions,
including actions that are antibacterial, antioxidant, and capable of
scavenging free radicals [20, 21].
Propolis has recently been found
to exhibit a variety of biological activities, including those that are
antibacterial, antifungal, antiviral, immunoregulatory, antioxidative,
anticancer, hepatotropic, and antiinammatory, as well as potential use
for coronavirus 2019 (COVID–19) [22, 23]. The results indicate that CAPE–
like compounds could be employed as possible chemotherapeutic
agents against oral cancer. Additionally, oral submucosal broblast,
neck gingival carcinoma, and tongue squamous cell carcinoma cells
were revealed to be highly cytotoxic to CAPE [24]. The widely dispersed
avonoids are quercetin and rutin, which are signicant representatives
of the biologically active components in propolis and have strong
antioxidant and anticancer effects [25].
One can describe the behavior of ligands and target proteins at the
binding site and understand biochemical processes by using molecular
docking to mimic the interaction between a ligand and a protein [26].
For molecular docking investigations, CAPE and Quercetin compounds
were chosen because they have different chemical structures, have
a greater proportion of propolis components, and exhibit similar
activity to these molecules [27].
It was aimed to investigate the effect of propolis on pyruvate
kinase and superoxide dismutase activity in doxorubicin–induced
tissue damage. The molecular docking study was planned to analyze
to understand the interaction between DOX and enzymes. Due to
its broad range of biological activity, propolis has recently been
increasingly used in foods and beverages to promote health and
prevent diseases. This evaluation included the biochemical, molecular
docking chain that uses rats to investigate propolis mechanism in vivo
against tissue toxicity induced by DOX as an antioxidant, inammatory
and antiapoptotic agent.
MATERIALS AND METHODS
Experimental design
The local animal experiment ethics committee of Firat University
gave its consent to the conduct of this investigation (Protocol No:
2012/03–43). Forty–eight, three–month–old male Wistar–Albino rats
(Rattus norvegicus) weighing 250–300 g were utilized in the study;
they were procured from the Firat University Laboratory Animals
Breeding Unit. The rats were kept in air–conditioned rooms with a
xed temperature of 25 ± 2°C and 60–65% humidity, with a 12/12h light/
dark cycle, under standard conditions, and were fed on standard rat
food (pellet) and tap water ad libitum throughout the experimental
practices [28]. Experimental practices on rats were performed in
the Firat University Experimental Research Center.
In the study, rats were put into 4 groups, each including 7 rats: 1
st
group: control group, 2
nd
group: the group that received 100 mg·kg
-1
day (d) propolis by gavage for 7 d, 3
rd
group: the group that received
single dose 20 mg·kg
-1
body weight DOX (Fresenius Kabi Oncology Ltd.
19 Industrial Area, Baddi, Distt. Solan–India) intraperitoneally, and 4
th
group: the group that received propolis (100 mg·kg
-1
d by gavage, 7 d)
+ DOX (20 mg·kg
-1
body weight, intraperitoneal single dose). Propolis